Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest

Abstract In vertebrates, two major cell types produce extensive pigmentation: neuroepithelium-derived retinal pigment epithelium (RPE) of the eye and neural crest-derived melanocytes. Both produce melanin, express opsins, and exhibit photosensory functions. However, the evolutionary relationship bet...

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Main Authors: Yuliia Fatieieva, Rozalina Galimullina, Sergey Isaev, Alexander Klimovich, Laurence A. Lemaire, Igor Adameyko
Format: Article
Language:English
Published: Nature Portfolio 2025-07-01
Series:Communications Biology
Online Access:https://doi.org/10.1038/s42003-025-08502-0
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author Yuliia Fatieieva
Rozalina Galimullina
Sergey Isaev
Alexander Klimovich
Laurence A. Lemaire
Igor Adameyko
author_facet Yuliia Fatieieva
Rozalina Galimullina
Sergey Isaev
Alexander Klimovich
Laurence A. Lemaire
Igor Adameyko
author_sort Yuliia Fatieieva
collection DOAJ
description Abstract In vertebrates, two major cell types produce extensive pigmentation: neuroepithelium-derived retinal pigment epithelium (RPE) of the eye and neural crest-derived melanocytes. Both produce melanin, express opsins, and exhibit photosensory functions. However, the evolutionary relationship between these cells - whether pigmentation was coopted or they share a common ancestry - remains unclear. We explore these scenarios including the hypothesis of a shared origin from an ancestral pigmented photosensory structure. For this, we harness single cell transcriptomics, chromatin accessibility and spatial transcriptomics data, to connect the transcriptional programs in melanocytes, pinealocytes and RPE with that of the pigmented cells in the sensory vesicle of the tunicate Ciona. The results reveal common regulatory gene expression modules spanning beyond pigment production, including photoreception, metabolism and biosynthesis. This evidence does not favor a model where pigmentation was coopted into one of these cell types, and rather supports the homology of melanocytes and RPE. Further, phylotranscriptomics approach expose recently-evolved melanocyte-specific and RPE-specific functions, which diversified after these types split from the ancestral cell type. Overall, our results support that melanocytes and RPE evolved from ancestral pigmented photosensory structures in chordates, initiating the origin of the neural crest – a major evolutionary driver of the vertebrate lineage.
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issn 2399-3642
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spelling doaj-art-2829bb4d28454def8afb7b7cf8682a5f2025-08-20T03:42:52ZengNature PortfolioCommunications Biology2399-36422025-07-018112010.1038/s42003-025-08502-0Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crestYuliia Fatieieva0Rozalina Galimullina1Sergey Isaev2Alexander Klimovich3Laurence A. Lemaire4Igor Adameyko5Department of Neuroimmunology, Center for Brain Research, Medical University ViennaDepartment of Neuroimmunology, Center for Brain Research, Medical University ViennaDepartment of Neuroimmunology, Center for Brain Research, Medical University ViennaZoological Institute, Christian-Albrechts University of KielDepartment of Biology, Saint Louis UniversityDepartment of Neuroimmunology, Center for Brain Research, Medical University ViennaAbstract In vertebrates, two major cell types produce extensive pigmentation: neuroepithelium-derived retinal pigment epithelium (RPE) of the eye and neural crest-derived melanocytes. Both produce melanin, express opsins, and exhibit photosensory functions. However, the evolutionary relationship between these cells - whether pigmentation was coopted or they share a common ancestry - remains unclear. We explore these scenarios including the hypothesis of a shared origin from an ancestral pigmented photosensory structure. For this, we harness single cell transcriptomics, chromatin accessibility and spatial transcriptomics data, to connect the transcriptional programs in melanocytes, pinealocytes and RPE with that of the pigmented cells in the sensory vesicle of the tunicate Ciona. The results reveal common regulatory gene expression modules spanning beyond pigment production, including photoreception, metabolism and biosynthesis. This evidence does not favor a model where pigmentation was coopted into one of these cell types, and rather supports the homology of melanocytes and RPE. Further, phylotranscriptomics approach expose recently-evolved melanocyte-specific and RPE-specific functions, which diversified after these types split from the ancestral cell type. Overall, our results support that melanocytes and RPE evolved from ancestral pigmented photosensory structures in chordates, initiating the origin of the neural crest – a major evolutionary driver of the vertebrate lineage.https://doi.org/10.1038/s42003-025-08502-0
spellingShingle Yuliia Fatieieva
Rozalina Galimullina
Sergey Isaev
Alexander Klimovich
Laurence A. Lemaire
Igor Adameyko
Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest
Communications Biology
title Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest
title_full Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest
title_fullStr Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest
title_full_unstemmed Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest
title_short Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest
title_sort melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest
url https://doi.org/10.1038/s42003-025-08502-0
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