New Data on <i>Rhinogobius chiengmaiensis</i> and <i>Rhinogobius mekongianus</i> in Thailand by DNA Barcoding and Morphological Methods

New Data on <i>Rhinogobius chiengmaiensis</i> and <i>Rhinogobius mekongianus</i> in Thailand by DNA Barcoding and Morphological Methods

A combination of morphological analysis and DNA barcoding (partial sequences of the cytochrome c oxidase I (COI) gene) was used to differentiate four gobiid fish species in the family Oxudercidae. <i>Rhinogobius chiengmaiensis</i> and <i>Rhinogobius mekongianus</i> were found...

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Bibliographic Details
Main Authors: Siriluck Tuncharoen, Paiboon Panase, Nontree Panprommin, Eakapol Wangkahart, Supranee Ruenkoed, Keatipong Mongkolwit, Dutrudi Panprommin
Format: Article
Language:English
Published: MDPI AG 2025-03-01
Series:Animals
Subjects:
morphological identification
DNA barcoding
cytochrome c oxidase I
species identification
<i>Rhinogobius</i>
Oxudercidae
Online Access:https://www.mdpi.com/2076-2615/15/6/871
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Summary:A combination of morphological analysis and DNA barcoding (partial sequences of the cytochrome c oxidase I (COI) gene) was used to differentiate four gobiid fish species in the family Oxudercidae. <i>Rhinogobius chiengmaiensis</i> and <i>Rhinogobius mekongianus</i> were found in Thailand, while <i>Eugnathogobius siamensis</i> and <i>Pseudogobiopsis oligactis</i> were used for comparative purposes. Morphological identification relied on appearances, counts, and measurements. The 707-base pair COI sequences from eleven samples of four gobiid species were compared with reference sequences in public databases to confirm their scientific names. The average AT content was 51.8 ± 0.5% and the GC content was 48.2 ± 0.5%. Intraspecific genetic distances ranged from 0.00–0.28%, while interspecific genetic distances ranged from 0.86–16.63%. A neighbor-joining (NJ) phylogenetic tree depicted the relationships among the COI sequences of these species. Morphological analysis and COI sequences successfully distinguished the four gobiid species. Notably, the COI sequences of <i>R. chiengmaiensis</i>, <i>R. mekongianus</i>, and <i>E. siamensis</i> were previously unreported, hence, this study is the first report to add their sequences to public databases. These results can serve as valuable information for the management of aquatic resources, conservation, and aquaculture efforts.
ISSN:2076-2615

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