BIOINFORMATIC ANALYSIS OF THE GENOME OF THE Geobacillus stearothermophilus 22 STRAIN ISOLATED FROM THE GARGA HOT SPRING, BAIKAL REGION
A new strain, Geobacillus stearothermophilus 22 was isolated from the Garga hot spring in the Bargusin Valley, Baikal Region, Russia. The morphology and biochemistry of the strain were analyzed, and the genomewide sequencing was conducted. The sequence was subjected to bioinformatic analysis. Nucle...
Saved in:
| Main Authors: | , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders
2015-01-01
|
| Series: | Вавиловский журнал генетики и селекции |
| Subjects: | |
| Online Access: | https://vavilov.elpub.ru/jour/article/view/190 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1832575282132811776 |
|---|---|
| author | A. S. Rozanov T. V. Ivanisenko A. V. Bryanskaya S. V. Shekhovtsov M. D. Logacheva O. V. Saik T. K. Malup P. S. Demenkov T. N. Goryachkovskaya V. A. Ivanisenko S. E. Peltek |
| author_facet | A. S. Rozanov T. V. Ivanisenko A. V. Bryanskaya S. V. Shekhovtsov M. D. Logacheva O. V. Saik T. K. Malup P. S. Demenkov T. N. Goryachkovskaya V. A. Ivanisenko S. E. Peltek |
| author_sort | A. S. Rozanov |
| collection | DOAJ |
| description | A new strain, Geobacillus stearothermophilus 22 was isolated from the Garga hot spring in the Bargusin Valley, Baikal Region, Russia. The morphology and biochemistry of the strain were analyzed, and the genomewide sequencing was conducted. The sequence was subjected to bioinformatic analysis. Nucleotide sequences (contigs) of the strain were found to be similar to the genome of the thermophilic strain G. kaustophilus Y412MC52. The proteome of the new strain was analyzed. Fragments associated with hemicellulases (endoxylanase, beta xylosidase, and arabinofuranosidase) and the endoxylanase enzyme were detected. |
| format | Article |
| id | doaj-art-265c5d00a96f4d109b2cdc7b1231ce8a |
| institution | Kabale University |
| issn | 2500-3259 |
| language | English |
| publishDate | 2015-01-01 |
| publisher | Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders |
| record_format | Article |
| series | Вавиловский журнал генетики и селекции |
| spelling | doaj-art-265c5d00a96f4d109b2cdc7b1231ce8a2025-02-01T09:58:00ZengSiberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and BreedersВавиловский журнал генетики и селекции2500-32592015-01-01174/1659665174BIOINFORMATIC ANALYSIS OF THE GENOME OF THE Geobacillus stearothermophilus 22 STRAIN ISOLATED FROM THE GARGA HOT SPRING, BAIKAL REGIONA. S. Rozanov0T. V. Ivanisenko1A. V. Bryanskaya2S. V. Shekhovtsov3M. D. Logacheva4O. V. Saik5T. K. Malup6P. S. Demenkov7T. N. Goryachkovskaya8V. A. Ivanisenko9S. E. Peltek10Institute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaLomonosov Moscow State University, Moscow, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaA new strain, Geobacillus stearothermophilus 22 was isolated from the Garga hot spring in the Bargusin Valley, Baikal Region, Russia. The morphology and biochemistry of the strain were analyzed, and the genomewide sequencing was conducted. The sequence was subjected to bioinformatic analysis. Nucleotide sequences (contigs) of the strain were found to be similar to the genome of the thermophilic strain G. kaustophilus Y412MC52. The proteome of the new strain was analyzed. Fragments associated with hemicellulases (endoxylanase, beta xylosidase, and arabinofuranosidase) and the endoxylanase enzyme were detected.https://vavilov.elpub.ru/jour/article/view/190geobacillusthermophilegenome-wide sequencingbioinformatic analysis |
| spellingShingle | A. S. Rozanov T. V. Ivanisenko A. V. Bryanskaya S. V. Shekhovtsov M. D. Logacheva O. V. Saik T. K. Malup P. S. Demenkov T. N. Goryachkovskaya V. A. Ivanisenko S. E. Peltek BIOINFORMATIC ANALYSIS OF THE GENOME OF THE Geobacillus stearothermophilus 22 STRAIN ISOLATED FROM THE GARGA HOT SPRING, BAIKAL REGION Вавиловский журнал генетики и селекции geobacillus thermophile genome-wide sequencing bioinformatic analysis |
| title | BIOINFORMATIC ANALYSIS OF THE GENOME OF THE Geobacillus stearothermophilus 22 STRAIN ISOLATED FROM THE GARGA HOT SPRING, BAIKAL REGION |
| title_full | BIOINFORMATIC ANALYSIS OF THE GENOME OF THE Geobacillus stearothermophilus 22 STRAIN ISOLATED FROM THE GARGA HOT SPRING, BAIKAL REGION |
| title_fullStr | BIOINFORMATIC ANALYSIS OF THE GENOME OF THE Geobacillus stearothermophilus 22 STRAIN ISOLATED FROM THE GARGA HOT SPRING, BAIKAL REGION |
| title_full_unstemmed | BIOINFORMATIC ANALYSIS OF THE GENOME OF THE Geobacillus stearothermophilus 22 STRAIN ISOLATED FROM THE GARGA HOT SPRING, BAIKAL REGION |
| title_short | BIOINFORMATIC ANALYSIS OF THE GENOME OF THE Geobacillus stearothermophilus 22 STRAIN ISOLATED FROM THE GARGA HOT SPRING, BAIKAL REGION |
| title_sort | bioinformatic analysis of the genome of the geobacillus stearothermophilus 22 strain isolated from the garga hot spring baikal region |
| topic | geobacillus thermophile genome-wide sequencing bioinformatic analysis |
| url | https://vavilov.elpub.ru/jour/article/view/190 |
| work_keys_str_mv | AT asrozanov bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT tvivanisenko bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT avbryanskaya bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT svshekhovtsov bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT mdlogacheva bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT ovsaik bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT tkmalup bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT psdemenkov bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT tngoryachkovskaya bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT vaivanisenko bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion AT sepeltek bioinformaticanalysisofthegenomeofthegeobacillusstearothermophilus22strainisolatedfromthegargahotspringbaikalregion |