Decomposition of the pangenome matrix reveals a structure in gene distribution in the Escherichia coli species

Decomposition of the pangenome matrix reveals a structure in gene distribution in the Escherichia coli species

ABSTRACT Thousands of complete genome sequences for strains of a species that are now available enable the advancement of pangenome analytics to a new level of sophistication. We collected 2,377 publicly available complete genomes of Escherichia coli for detailed pangenome analysis. The core genome...

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Bibliographic Details
Main Authors: Siddharth M. Chauhan, Omid Ardalani, Jason C. Hyun, Jonathan M. Monk, Patrick V. Phaneuf, Bernhard O. Palsson
Format: Article
Language:English
Published: American Society for Microbiology 2025-01-01
Series:mSphere
Subjects:
Shigella
Escherichia coli
genomics
typing
computational biology
genome analysis
Online Access:https://journals.asm.org/doi/10.1128/msphere.00532-24
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