Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read Sequencing
The hop cyst nematode, Heterodera humuli, is the most common plant-parasitic nematode associated with hop worldwide. This study reports the draft genome of H. humuli generated on the PacBio Sequel IIe System with the ultra-low DNA input HiFi sequencing method, and the corresponding genome annotation...
Saved in:
| Main Authors: | , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Sciendo
2024-08-01
|
| Series: | Journal of Nematology |
| Subjects: | |
| Online Access: | https://doi.org/10.2478/jofnem-2024-0029 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1850159150124761088 |
|---|---|
| author | Núñez-Rodríguez Lester A. Wram Catherine L. Hesse Cedar Zasada Inga A. |
| author_facet | Núñez-Rodríguez Lester A. Wram Catherine L. Hesse Cedar Zasada Inga A. |
| author_sort | Núñez-Rodríguez Lester A. |
| collection | DOAJ |
| description | The hop cyst nematode, Heterodera humuli, is the most common plant-parasitic nematode associated with hop worldwide. This study reports the draft genome of H. humuli generated on the PacBio Sequel IIe System with the ultra-low DNA input HiFi sequencing method, and the corresponding genome annotation. This genome resource will help further studies on H. humuli and other cyst nematodes. |
| format | Article |
| id | doaj-art-1ea5b02c1d23497bb48e996b02f193e7 |
| institution | OA Journals |
| issn | 2640-396X |
| language | English |
| publishDate | 2024-08-01 |
| publisher | Sciendo |
| record_format | Article |
| series | Journal of Nematology |
| spelling | doaj-art-1ea5b02c1d23497bb48e996b02f193e72025-08-20T02:23:39ZengSciendoJournal of Nematology2640-396X2024-08-0156173116010.2478/jofnem-2024-0029Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read SequencingNúñez-Rodríguez Lester A.0Wram Catherine L.1Hesse Cedar2Zasada Inga A.3Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR97331USDA-ARS Mycology and Nematology Genetic Diversity and Biology Lab, Beltsville, MD20705USDA-ARS Horticultural Crops Production and Genetic Improvement Research Unit, Corvallis, OR97331USDA-ARS Horticultural Crops Disease and Pest Management Research Unit, Corvallis, OR97331The hop cyst nematode, Heterodera humuli, is the most common plant-parasitic nematode associated with hop worldwide. This study reports the draft genome of H. humuli generated on the PacBio Sequel IIe System with the ultra-low DNA input HiFi sequencing method, and the corresponding genome annotation. This genome resource will help further studies on H. humuli and other cyst nematodes.https://doi.org/10.2478/jofnem-2024-0029cyst nematodesheterodera humulihoplong readsultra-low dna input |
| spellingShingle | Núñez-Rodríguez Lester A. Wram Catherine L. Hesse Cedar Zasada Inga A. Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read Sequencing Journal of Nematology cyst nematodes heterodera humuli hop long reads ultra-low dna input |
| title | Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read Sequencing |
| title_full | Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read Sequencing |
| title_fullStr | Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read Sequencing |
| title_full_unstemmed | Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read Sequencing |
| title_short | Genome Announcement: Draft Genome Assembly of Heterodera humuli Generated Using Long-Read Sequencing |
| title_sort | genome announcement draft genome assembly of heterodera humuli generated using long read sequencing |
| topic | cyst nematodes heterodera humuli hop long reads ultra-low dna input |
| url | https://doi.org/10.2478/jofnem-2024-0029 |
| work_keys_str_mv | AT nunezrodriguezlestera genomeannouncementdraftgenomeassemblyofheteroderahumuligeneratedusinglongreadsequencing AT wramcatherinel genomeannouncementdraftgenomeassemblyofheteroderahumuligeneratedusinglongreadsequencing AT hessecedar genomeannouncementdraftgenomeassemblyofheteroderahumuligeneratedusinglongreadsequencing AT zasadaingaa genomeannouncementdraftgenomeassemblyofheteroderahumuligeneratedusinglongreadsequencing |