Identification and validation of oxidative stress-related genes for the diagnosis of sepsis-induced acute lung injury.
Sepsis-induced acute lung injury (ALI) is an inflammatory pulmonary condition characterized by a complex pathophysiological mechanism. The development and progression of sepsis-induced ALI are accompanied by significant oxidative damage. This study aimed to identify key oxidative stress-related gene...
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2025-01-01
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| Series: | PLoS ONE |
| Online Access: | https://doi.org/10.1371/journal.pone.0327945 |
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| author | Xue Fu Jiawei Dong Jian Yang Xiaotian Zhang Sen Wang Shangkun Cai Yiwei Zhang Meng Zhang |
| author_facet | Xue Fu Jiawei Dong Jian Yang Xiaotian Zhang Sen Wang Shangkun Cai Yiwei Zhang Meng Zhang |
| author_sort | Xue Fu |
| collection | DOAJ |
| description | Sepsis-induced acute lung injury (ALI) is an inflammatory pulmonary condition characterized by a complex pathophysiological mechanism. The development and progression of sepsis-induced ALI are accompanied by significant oxidative damage. This study aimed to identify key oxidative stress-related genes associated with sepsis-induced ALI. Samples, including sepsis, sepsis-induced ALI, and control groups, were obtained from the Gene Expression Omnibus database. Key oxidative stress-related genes in sepsis-induced ALI were identified using Weighted Gene Co-expression Network Analysis (WGCNA), Protein-Protein Interaction (PPI) network analysis, logistic regression, and LASSO regression analysis. Functional information regarding these genes was explored through Gene Set Variation Analysis (GSVA) and Gene Set Enrichment Analysis (GSEA). A logistic regression model was constructed based on the identified hub oxidative stress-related genes. The diagnostic value of this model for sepsis-induced ALI was assessed using the receiver operating characteristic (ROC) curve. The relative abundance of 22 human immune cell types was calculated using CIBERSORT software. The expression levels of hub genes in the blood samples of sepsis-induced ALI patients were analyzed through RT-PCR and ELISA. A total of 1,055 genes associated with sepsis-induced ALI were identified via WGCNA, of which 145 genes were linked to oxidative stress. GSVA revealed that these 145 genes were significantly enriched in 79 biological pathways, while GSEA indicated a strong association with immune-related signaling pathways. Additionally, the top 20 genes were selected through PPI network analysis. The logistic regression model was constructed using VDAC1, HSPA8, SOD1, HSPA9, TXN, and SNCA. In the training set and the validation set, the AUC values of logistic regression model were 0.9091 and 0.8279, respectively, suggesting good discriminability when distinguishing normal from sepsis-induced ALI. Notably, these six genes were correlated with immune cell infiltration in sepsis-induced ALI, with HSPA8, SOD1, and HSPA9 showing downregulation in sepsis-induced ALI. In conclusion, VDAC1, HSPA8, SOD1, HSPA9, TXN, and SNCA have been identified as oxidative stress-related genes associated with sepsis-induced ALI. The logistic regression model developed using these six genes could identify patients with sepsis-induced ALI. Our findings might provide novel research strategies for the molecular therapeutic target of sepsis-induced ALI. |
| format | Article |
| id | doaj-art-1d4b69183ec04be98676a7feb9de6cfb |
| institution | Kabale University |
| issn | 1932-6203 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj-art-1d4b69183ec04be98676a7feb9de6cfb2025-08-20T03:32:04ZengPublic Library of Science (PLoS)PLoS ONE1932-62032025-01-01207e032794510.1371/journal.pone.0327945Identification and validation of oxidative stress-related genes for the diagnosis of sepsis-induced acute lung injury.Xue FuJiawei DongJian YangXiaotian ZhangSen WangShangkun CaiYiwei ZhangMeng ZhangSepsis-induced acute lung injury (ALI) is an inflammatory pulmonary condition characterized by a complex pathophysiological mechanism. The development and progression of sepsis-induced ALI are accompanied by significant oxidative damage. This study aimed to identify key oxidative stress-related genes associated with sepsis-induced ALI. Samples, including sepsis, sepsis-induced ALI, and control groups, were obtained from the Gene Expression Omnibus database. Key oxidative stress-related genes in sepsis-induced ALI were identified using Weighted Gene Co-expression Network Analysis (WGCNA), Protein-Protein Interaction (PPI) network analysis, logistic regression, and LASSO regression analysis. Functional information regarding these genes was explored through Gene Set Variation Analysis (GSVA) and Gene Set Enrichment Analysis (GSEA). A logistic regression model was constructed based on the identified hub oxidative stress-related genes. The diagnostic value of this model for sepsis-induced ALI was assessed using the receiver operating characteristic (ROC) curve. The relative abundance of 22 human immune cell types was calculated using CIBERSORT software. The expression levels of hub genes in the blood samples of sepsis-induced ALI patients were analyzed through RT-PCR and ELISA. A total of 1,055 genes associated with sepsis-induced ALI were identified via WGCNA, of which 145 genes were linked to oxidative stress. GSVA revealed that these 145 genes were significantly enriched in 79 biological pathways, while GSEA indicated a strong association with immune-related signaling pathways. Additionally, the top 20 genes were selected through PPI network analysis. The logistic regression model was constructed using VDAC1, HSPA8, SOD1, HSPA9, TXN, and SNCA. In the training set and the validation set, the AUC values of logistic regression model were 0.9091 and 0.8279, respectively, suggesting good discriminability when distinguishing normal from sepsis-induced ALI. Notably, these six genes were correlated with immune cell infiltration in sepsis-induced ALI, with HSPA8, SOD1, and HSPA9 showing downregulation in sepsis-induced ALI. In conclusion, VDAC1, HSPA8, SOD1, HSPA9, TXN, and SNCA have been identified as oxidative stress-related genes associated with sepsis-induced ALI. The logistic regression model developed using these six genes could identify patients with sepsis-induced ALI. Our findings might provide novel research strategies for the molecular therapeutic target of sepsis-induced ALI.https://doi.org/10.1371/journal.pone.0327945 |
| spellingShingle | Xue Fu Jiawei Dong Jian Yang Xiaotian Zhang Sen Wang Shangkun Cai Yiwei Zhang Meng Zhang Identification and validation of oxidative stress-related genes for the diagnosis of sepsis-induced acute lung injury. PLoS ONE |
| title | Identification and validation of oxidative stress-related genes for the diagnosis of sepsis-induced acute lung injury. |
| title_full | Identification and validation of oxidative stress-related genes for the diagnosis of sepsis-induced acute lung injury. |
| title_fullStr | Identification and validation of oxidative stress-related genes for the diagnosis of sepsis-induced acute lung injury. |
| title_full_unstemmed | Identification and validation of oxidative stress-related genes for the diagnosis of sepsis-induced acute lung injury. |
| title_short | Identification and validation of oxidative stress-related genes for the diagnosis of sepsis-induced acute lung injury. |
| title_sort | identification and validation of oxidative stress related genes for the diagnosis of sepsis induced acute lung injury |
| url | https://doi.org/10.1371/journal.pone.0327945 |
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