Whole-Genome Sequencing of <i>Flammulina filiformis</i> and Multi-Omics Analysis in Response to Low Temperature

Whole-Genome Sequencing of <i>Flammulina filiformis</i> and Multi-Omics Analysis in Response to Low Temperature

The growth of <i>Flammulina filiformis</i> is strongly dependent on low-temperature cues for the initiation of primordia formation. To obtain a comprehensive understanding of the molecular mechanisms that govern the mycelial response to cold stress, de novo genome sequencing of the <i...

Full description

Saved in:

Bibliographic Details
Main Authors:	Xinmin Liang, Jing Han, Yuqin Cui, Xueqin Shu, Mengting Lei, Bo Wang, Dinghong Jia, Weihong Peng, Xiaolan He, Xun Liu
Format:	Article
Language:	English
Published:	MDPI AG 2025-03-01
Series:	Journal of Fungi
Subjects:	<i>Flammulina filiformis</i> whole-genome sequencing transcriptome metabolome cold adaptation
Online Access:	https://www.mdpi.com/2309-608X/11/3/229
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Genome-wide identification and transcriptome analysis of the cytochrome P450 genes revealed its potential role in the growth of Flammulina filiformis
by: Xun Liu, et al.
Published: (2025-04-01)

The Exploration of <i>Cordyceps militaris</i> Extract as a Postharvest Preservative for <i>Flammulina filiformis</i>
by: Wenjing Chen, et al.
Published: (2025-04-01)

Zinc Treatment Effects on the Expression of Enzyme Genes Related to Lysine Synthesis Pathway in <i>Flammulina filiformis</i> Mycelia
by: Yu Qu, et al.
Published: (2025-04-01)

Identification of Critical Candidate Genes Controlling Monokaryon Fruiting in <i>Flammulina filiformis</i> Using Genetic Population Construction and Bulked Segregant Analysis Sequencing
by: Peng Wang, et al.
Published: (2025-07-01)

Identification of bacterial communities associated with needle mushroom (Flammulina filiformis) and its production environment
by: Zhenghui Liu, et al.
Published: (2024-12-01)

Enhancing the Hypolipidemic and Functional Properties of <i>Flammulina velutipes</i> Root Dietary Fiber via Steam Explosion
by: Chao Ma, et al.
Published: (2024-11-01)

Activity Analysis and Inhibition Mechanism of Four Novel Angiotensin I-Converting Enzyme Inhibitory Peptides Prepared from <i>Flammulina velutipes</i> by Enzymatic Hydrolysis
by: Yajie Zhang, et al.
Published: (2025-07-01)

Whole-Genome Sequence Analysis of <i>Flammulina filiformis</i> and Functional Validation of <i>Gad</i>, a Key Gene for γ-Aminobutyric Acid Synthesis
by: Wenyun Li, et al.
Published: (2024-12-01)

Antitumor and Antioxidant Properties of Water-Soluble Polysaccharides from Submerged Mycelium of Flammulina velutipes
by: L. M. Krasnopolskaya, et al.
Published: (2020-05-01)

Physicochemical properties and fermentation characteristics of a novel polysaccharide degraded from Flammulina velutipes residues polysaccharide
by: Liping Wang, et al.
Published: (2024-12-01)

Effect of Alkali Lignin on Laccase Activity and Mycelial Biomass of Flammulina velutipes
by: Mei-Ling Han, et al.
Published: (2025-01-01)

Effects of Heating Temperature, pH and Ionic Strength on the Stability of Flammulina velutipes Emulsions
by: Qiuyu YU, et al.
Published: (2025-04-01)

Optimizing Flammulina velutipes residue use: impact on health metrics and performance in three-yellow chickens
by: Yuanxiao Li, et al.
Published: (2025-02-01)

Exploring the Physiological and Molecular Mechanisms by Which Potassium Regulates Low-Temperature Tolerance of Coconut (<i>Cocos nucifera</i> L.) Seedlings
by: Lilan Lu, et al.
Published: (2024-12-01)

Physiological and Multi-Omics Analysis in Leaves of <i>Solanum americanum</i> in Response to Cd Toxicity
by: Jiao Zhou, et al.
Published: (2025-07-01)

Integrated Multi-Omics Analysis to Investigate the Molecular Mechanisms Underlying the Response of <i>Auricularia heimuer</i> to High-Temperature Stress
by: Fang Lu, et al.
Published: (2025-02-01)

Multi-Omics Analysis Provides Insights into Green Soybean in Response to Cold Stress
by: Yanhui Lin, et al.
Published: (2024-12-01)

Effect of application method on dichlobenil efficacy of hair fescue (Festuca filiformis) in lowbush blueberry
by: Craig B. MacEachern, et al.
Published: (2025-01-01)

Integrative Transcriptome and Metabolome Analysis Reveals Candidate Genes Related to Terpenoid Synthesis in <i>Amylostereum areolatum</i> (<i>Russulales: Amylostereaceae</i>)
by: Lixia Wang, et al.
Published: (2025-05-01)

Integrated Multi-Omics Analysis of the Developmental Stages of <i>Antheraea pernyi</i> Pupae: Dynamic Changes in Metabolite Profiles and Gene Expression
by: Shuhui Ma, et al.
Published: (2025-07-01)

Optimization of bioactive polyphenols recovery from Flammulina velutipes stem waste using nonionic surfactant-integrated ultrasound-assisted extraction
by: Huimin Huo, et al.
Published: (2025-08-01)

Integrative Omics Analysis Reveals Mechanisms of Anthocyanin Biosynthesis in Djulis Spikes
by: Chunmei Zheng, et al.
Published: (2025-01-01)

Effect of dietary substitution of corn with Flammulina velutipes residue on growth performance, serum biochemical indicators, slaughter performance and cecal microbiota in geese
by: Huiying Wang, et al.
Published: (2024-12-01)

Combined Multi-Omics and Co-Expression Network Analyses Uncover the Pigment Accumulation Mechanism of Orange-Red Petals in <i>Brassica napus</i> L.
by: Ledong Jia, et al.
Published: (2025-06-01)

Selenium Alleviates Low-Temperature Stress in Rice by Regulating Metabolic Networks and Functional Genes
by: Naixin Liu, et al.
Published: (2025-07-01)

Effect of dietary Flammulina velutipes (Curt.: Fr.) stem waste on ovarian follicles development in laying hens
by: Chang Sun, et al.
Published: (2023-12-01)

Effect of ionic strength and mixing ratio on complex coacervation of soy protein isolate/Flammulina velutipes polysaccharide
by: Junmiao Zhang, et al.
Published: (2023-01-01)

Flammulina velutipes mycorrhizae dietary fiber attenuates the development of obesity via regulating lipid metabolism in high-fat diet-induced obese mice
by: Fengjuan Jia, et al.
Published: (2025-03-01)

Arginine-Mediated Liver Immune Regulation and Antioxidant Defense in Largemouth Bass (<i>Micropterus salmoides</i>): Multi-Omics Insights into Metabolic Remodeling During <i>Nocardia seriolae</i> Infection
by: Yu-Long Sun, et al.
Published: (2025-06-01)

Genomic and Multi-Omics Analysis of <i>Phlebopus portentosus</i>: Effects of Cultivation on Secondary Metabolites
by: Zujiang Kang, et al.
Published: (2025-04-01)

<i>Agave macroacantha</i> Transcriptome Reveals Candidate <i>CNGC</i> Genes Responsive to Cold Stress in Agave
by: Yubo Li, et al.
Published: (2025-02-01)

Molecular Elucidation of Anthocyanin Accumulation Mechanisms in <i>Hippeastrum hybridum</i> Cultivars
by: Pengyu Guo, et al.
Published: (2025-07-01)

Molecular and Metabolic Regulation of Flavonoid Biosynthesis in Two Varieties of <i>Dendrobium devonianum</i>
by: Ran Pu, et al.
Published: (2024-12-01)

Heterologous Overexpression and Functional Analysis of the <i>Isodon suzhouensis IsKS1</i> Gene in <i>Arabidopsis thaliana</i>
by: Fawang Liu, et al.
Published: (2025-06-01)

Integrated Transcriptomic and Metabolic Analyses Highlight Key Pathways Involved in the Somatic Embryogenesis of <i>Picea mongolica</i>
by: Jinling Dai, et al.
Published: (2025-07-01)

Integrated Metabolomic and Transcriptomic Analysis of <i>Nitraria</i> Berries Indicate the Role of Flavonoids in Adaptation to High Altitude
by: Qing Zhao, et al.
Published: (2024-11-01)

Multi-Omics Joint Analysis of Molecular Mechanisms of Compound Essential Oils Inhibiting Spoilage Yeast in Paocai
by: Xinyi Wu, et al.
Published: (2025-06-01)

Effect of ultrasonic modification on the protective activity of Flammulina velutipes polysaccharide to prevent ethanol-induced injury on GES-1 cells
by: Jinrong Xiao, et al.
Published: (2023-11-01)

Decoding Flavonoid Metabolism for Nutritional Enhancement: A Transcriptome–Metabolome Integration Study of Biosynthesis in Edible <i>Chrysanthemum indicum</i> L.
by: Chengxiang Wang, et al.
Published: (2025-05-01)

Genome-Wide Identification of the <i>bHLH</i> Gene Family in Kiwifruit (<i>Actinidia chinensis</i>) and the Responses of <i>AcbHLH84</i> and <i>AcbHLH97</i> Under Drought Stress
by: Ke Zhao, et al.
Published: (2025-06-01)