Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae)
Abstract European corn borer Ostrinia nubilalis (Hübner) is the most important pest of maize around world, and an ideal model for the sympatric host races, evolutionary and speciation research. In this study, we assembled a chromosome-level genome of Z strain O. nubilalis by the integrated Illumina...
Saved in:
| Main Authors: | , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Nature Portfolio
2025-03-01
|
| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-025-04609-5 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1849768105631285248 |
|---|---|
| author | Xinhua Ding Yue Zhang Xiaowu Wang Kaiyun Fu Zunzun Jia Zhihui Wang Aerziguli Rouzi Tursun Ahmat Wenchao Guo |
| author_facet | Xinhua Ding Yue Zhang Xiaowu Wang Kaiyun Fu Zunzun Jia Zhihui Wang Aerziguli Rouzi Tursun Ahmat Wenchao Guo |
| author_sort | Xinhua Ding |
| collection | DOAJ |
| description | Abstract European corn borer Ostrinia nubilalis (Hübner) is the most important pest of maize around world, and an ideal model for the sympatric host races, evolutionary and speciation research. In this study, we assembled a chromosome-level genome of Z strain O. nubilalis by the integrated Illumina short reads, PacBio Revio long reads, and Hi-C sequencing data. The chromosome-level genome was 480.04 Mb in total length with a contig N50 length of 16.51 Mb, which 98.59% genome anchored into 31 chromosomes. For the annotation, 1,046,695 repeat sequences in length of 212.07 Mb, 1,550 non-coding RNAs (including 1,208 tRNAs, 179 rRNAs, 62 miRNAs, 81 snRNAs, and 20 snoRNAs), and 17,145 protein-coding genes were identified. And 100% genes were functional annotated by SwissProt, NR, eggNOG, Go, and KEGG database. This genome provides a valuable genomics resource to elucidate the host plant adaptation, thermal adaptation, diapause induction, Bacillus thuringiensis toxin resistance, sexual communication, sympatric host races, and speciation process of O. nubilalis. |
| format | Article |
| id | doaj-art-16fbc7011476495d9efcbf05c576ccef |
| institution | DOAJ |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-03-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-16fbc7011476495d9efcbf05c576ccef2025-08-20T03:03:57ZengNature PortfolioScientific Data2052-44632025-03-0112111210.1038/s41597-025-04609-5Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae)Xinhua Ding0Yue Zhang1Xiaowu Wang2Kaiyun Fu3Zunzun Jia4Zhihui Wang5Aerziguli Rouzi6Tursun Ahmat7Wenchao Guo8Key Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, National Plant Protection Scientific Observation and Experiment Station of Korla, Xinjiang Key Laboratory of Agricultural Biosafety, Institute of Plant Protection, Xinjiang Uygur Autonomous Region Academy of Agricultural SciencesInstitute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural SciencesKey Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, National Plant Protection Scientific Observation and Experiment Station of Korla, Xinjiang Key Laboratory of Agricultural Biosafety, Institute of Plant Protection, Xinjiang Uygur Autonomous Region Academy of Agricultural SciencesKey Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, National Plant Protection Scientific Observation and Experiment Station of Korla, Xinjiang Key Laboratory of Agricultural Biosafety, Institute of Plant Protection, Xinjiang Uygur Autonomous Region Academy of Agricultural SciencesKey Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, National Plant Protection Scientific Observation and Experiment Station of Korla, Xinjiang Key Laboratory of Agricultural Biosafety, Institute of Plant Protection, Xinjiang Uygur Autonomous Region Academy of Agricultural SciencesInstitution of Microbial Application, Xinjiang Academy of Agricultural SciencesKey Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, National Plant Protection Scientific Observation and Experiment Station of Korla, Xinjiang Key Laboratory of Agricultural Biosafety, Institute of Plant Protection, Xinjiang Uygur Autonomous Region Academy of Agricultural SciencesKey Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, National Plant Protection Scientific Observation and Experiment Station of Korla, Xinjiang Key Laboratory of Agricultural Biosafety, Institute of Plant Protection, Xinjiang Uygur Autonomous Region Academy of Agricultural SciencesKey Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, National Plant Protection Scientific Observation and Experiment Station of Korla, Xinjiang Key Laboratory of Agricultural Biosafety, Institute of Plant Protection, Xinjiang Uygur Autonomous Region Academy of Agricultural SciencesAbstract European corn borer Ostrinia nubilalis (Hübner) is the most important pest of maize around world, and an ideal model for the sympatric host races, evolutionary and speciation research. In this study, we assembled a chromosome-level genome of Z strain O. nubilalis by the integrated Illumina short reads, PacBio Revio long reads, and Hi-C sequencing data. The chromosome-level genome was 480.04 Mb in total length with a contig N50 length of 16.51 Mb, which 98.59% genome anchored into 31 chromosomes. For the annotation, 1,046,695 repeat sequences in length of 212.07 Mb, 1,550 non-coding RNAs (including 1,208 tRNAs, 179 rRNAs, 62 miRNAs, 81 snRNAs, and 20 snoRNAs), and 17,145 protein-coding genes were identified. And 100% genes were functional annotated by SwissProt, NR, eggNOG, Go, and KEGG database. This genome provides a valuable genomics resource to elucidate the host plant adaptation, thermal adaptation, diapause induction, Bacillus thuringiensis toxin resistance, sexual communication, sympatric host races, and speciation process of O. nubilalis.https://doi.org/10.1038/s41597-025-04609-5 |
| spellingShingle | Xinhua Ding Yue Zhang Xiaowu Wang Kaiyun Fu Zunzun Jia Zhihui Wang Aerziguli Rouzi Tursun Ahmat Wenchao Guo Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae) Scientific Data |
| title | Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae) |
| title_full | Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae) |
| title_fullStr | Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae) |
| title_full_unstemmed | Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae) |
| title_short | Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae) |
| title_sort | chromosome level genome assembly of z strain european corn borer ostrinia nubilalis lepidoptera crambidae |
| url | https://doi.org/10.1038/s41597-025-04609-5 |
| work_keys_str_mv | AT xinhuading chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae AT yuezhang chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae AT xiaowuwang chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae AT kaiyunfu chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae AT zunzunjia chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae AT zhihuiwang chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae AT aerzigulirouzi chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae AT tursunahmat chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae AT wenchaoguo chromosomelevelgenomeassemblyofzstraineuropeancornborerostrinianubilalislepidopteracrambidae |