Finding high posterior density phylogenies by systematically extending a directed acyclic graph

Abstract Bayesian phylogenetics typically estimates a posterior distribution, or aspects thereof, using Markov chain Monte Carlo methods. These methods integrate over tree space by applying local rearrangements to move a tree through its space as a random walk. Previous work explored the possibility...

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Bibliographic Details
Main Authors: Chris Jennings-Shaffer, David H. Rich, Matthew Macaulay, Michael D. Karcher, Tanvi Ganapathy, Shosuke Kiami, Anna Kooperberg, Cheng Zhang, Marc A. Suchard, Frederick A. Matsen
Format: Article
Language:English
Published: BMC 2025-02-01
Series:Algorithms for Molecular Biology
Online Access:https://doi.org/10.1186/s13015-025-00273-x
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