Genomic Selection for Economically Important Traits in Dual-Purpose Simmental Cattle

Genomic selection (GS) is a new landmark method in modern animal breeding programs, and it has become a tool for routine genetic evaluation regarding dual-purpose cattle breeding. In this study, we employed data on milk-production, reproduction, and growth measurements of dual-purpose Simmental cows...

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Main Authors: Xiaoxue Zhang, Dan Wang, Menghua Zhang, Lei Xu, Xixia Huang, Yachun Wang
Format: Article
Language:English
Published: MDPI AG 2025-07-01
Series:Animals
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Online Access:https://www.mdpi.com/2076-2615/15/13/1960
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Summary:Genomic selection (GS) is a new landmark method in modern animal breeding programs, and it has become a tool for routine genetic evaluation regarding dual-purpose cattle breeding. In this study, we employed data on milk-production, reproduction, and growth measurements of dual-purpose Simmental cows during the period 1987–2022 from two large-scale farms in Northwest China. For this purpose, we used a single-trait model based on the A-array PBLUP and H-array ssGBLUP to perform genetic evaluation of milk-production, reproduction, and growth traits by applying the restricted maximum likelihood (REML) methods. The results revealed that the heritability based on the additive genetic correlation matrix was approximately 0.09–0.31 for milk-production traits, 0.03–0.43 for reproduction traits, and 0.13–0.43 for growth traits. In addition, the heritability based on the genome–pedigree association matrix was similarly 0.09–0.32 for milk-production traits, 0.04–0.44 for reproductive traits, and 0.14–0.43 for growth traits. In the entire population, the reliability of genomic estimated breeding values (GEBVs) increased by 0.6–3.2%, 0.2–2.4%, and 0.5–1.5% for milk-production, reproductive traits, and growth traits, respectively. In the genotyped population, the reliability of GEBV for milk-production and reproduction traits increased by 1.6–4.0% and 0.4–3.6%, respectively, whereas the reliability of GEBV for growth traits decreased by 12.0–17.0%. These results suggest that the construction of an H-matrix with ssGBLUP could improve the heritability and reliability of breeding values for milk-production and reproduction traits. However, the advantage was not evident for growth traits in smaller populations. The present results thus provide a basis for future application of genomic genetic evaluation of dual-purpose Simmental cattle, providing data support for the selection and marketing of excellent breeding bulls, thereby helping to establish a basis for their independently bred breeding bull.
ISSN:2076-2615