Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research

Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research

IntroductionThe agriculture genomics community has numerous data submission standards available, but the standards for describing and storing single-cell (SC, e.g., scRNA- seq) data are comparatively underdeveloped.MethodsTo bridge this gap, we leveraged recent advancements in human genomics infrast...

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Bibliographic Details
Main Authors: Muskan Kapoor, Enrique Sapena Ventura, Amy Walsh, Alexey Sokolov, Nancy George, Sunita Kumari, Nicholas J. Provart, Benjamin Cole, Marc Libault, Timothy Tickle, Wesley C. Warren, James E. Koltes, Irene Papatheodorou, Doreen Ware, Peter W. Harrison, Christine Elsik, Galabina Yordanova, Tony Burdett, Christopher K. Tuggle
Format: Article
Language:English
Published: Frontiers Media S.A. 2024-11-01
Series:Frontiers in Genetics
Subjects:
single-cell RNA-seq
metadata
HCA data portal
data ingestion portal
FAANG
data submission standards
Online Access:https://www.frontiersin.org/articles/10.3389/fgene.2024.1460351/full
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