Reconstructing rearrangement phylogenies of natural genomes

Abstract Background We study the classical problem of inferring ancestral genomes from a set of extant genomes under a given phylogeny, known as the Small Parsimony Problem (SPP). Genomes are represented as sequences of oriented markers, organized in one or more linear or circular chromosomes. Any m...

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Bibliographic Details
Main Authors: Leonard Bohnenkämper, Jens Stoye, Daniel Doerr
Format: Article
Language:English
Published: BMC 2025-06-01
Series:Algorithms for Molecular Biology
Subjects:
Online Access:https://doi.org/10.1186/s13015-025-00279-5
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