Characterization and genomic analysis of Lactiplantibacillus plantarum LP8 as a probiotic candidate for medical applicationsNCBI
This study presents the whole genome sequencing (WGS) and functional analysis of Lactiplantibacillus plantarum LP8, a promising probiotic strain, is presented in this research. The genome comprises a 3.23 Mbp circular chromosome and three plasmids including plasmid1_LP8 (58,764 bp), plasmid2_LP8 (45...
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| Format: | Article |
| Language: | English |
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Elsevier
2025-06-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340925002872 |
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| author | Nirusna Jehma Nattarika Chaichana Jirasa Boonsan Kamonnut Singkhamanan Monwadee Wonglapsuwan Rattanaruji Pomwised Sarunyou Chusri Komwit Surachat |
| author_facet | Nirusna Jehma Nattarika Chaichana Jirasa Boonsan Kamonnut Singkhamanan Monwadee Wonglapsuwan Rattanaruji Pomwised Sarunyou Chusri Komwit Surachat |
| author_sort | Nirusna Jehma |
| collection | DOAJ |
| description | This study presents the whole genome sequencing (WGS) and functional analysis of Lactiplantibacillus plantarum LP8, a promising probiotic strain, is presented in this research. The genome comprises a 3.23 Mbp circular chromosome and three plasmids including plasmid1_LP8 (58,764 bp), plasmid2_LP8 (45,003 bp), and plasmid3_LP8 (7985 bp). Functional annotation identified 3151 coding sequences (CDSs) mapped to 209 RAST subsystems, alongside biosynthesis gene clusters encoding Plantaricin J and other secondary metabolites such as RiPP-like peptides and terpenes. Safety analysis revealed no acquired antimicrobial resistance gene (AMR) or virulence genes, with only intrinsic resistance to certain antibiotics. In vitro analysis confirmed its sensitivity to antibiotics such as ampicillin, erythromycin, and tetracycline, and its hemolytic activity displayed an α-hemoly-sis pattern. These findings confirm L. plantarum LP8 as a safeand effective probiotic candidate with significant potential for antimicrobial and biotechnological applications. |
| format | Article |
| id | doaj-art-05c3b8fdcda8478da477a9d1a41f23bd |
| institution | OA Journals |
| issn | 2352-3409 |
| language | English |
| publishDate | 2025-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj-art-05c3b8fdcda8478da477a9d1a41f23bd2025-08-20T02:31:00ZengElsevierData in Brief2352-34092025-06-016011155510.1016/j.dib.2025.111555Characterization and genomic analysis of Lactiplantibacillus plantarum LP8 as a probiotic candidate for medical applicationsNCBINirusna Jehma0Nattarika Chaichana1Jirasa Boonsan2Kamonnut Singkhamanan3Monwadee Wonglapsuwan4Rattanaruji Pomwised5Sarunyou Chusri6Komwit Surachat7Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Hat Yai, Songkhla 90110, ThailandDepartment of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Hat Yai, Songkhla 90110, ThailandDepartment of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Hat Yai, Songkhla 90110, ThailandDepartment of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Hat Yai, Songkhla 90110, ThailandDivision of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90110, ThailandDivision of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90110, ThailandDivision of Infectious Diseases, Department of Internal Medicine, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, ThailandDepartment of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Hat Yai, Songkhla 90110, Thailand; Translational Medicine Research Center, Faculty of Medicine, Prince of Songkla University, Hat Yai, Songkhla 90110, Thailand; Corresponding author.This study presents the whole genome sequencing (WGS) and functional analysis of Lactiplantibacillus plantarum LP8, a promising probiotic strain, is presented in this research. The genome comprises a 3.23 Mbp circular chromosome and three plasmids including plasmid1_LP8 (58,764 bp), plasmid2_LP8 (45,003 bp), and plasmid3_LP8 (7985 bp). Functional annotation identified 3151 coding sequences (CDSs) mapped to 209 RAST subsystems, alongside biosynthesis gene clusters encoding Plantaricin J and other secondary metabolites such as RiPP-like peptides and terpenes. Safety analysis revealed no acquired antimicrobial resistance gene (AMR) or virulence genes, with only intrinsic resistance to certain antibiotics. In vitro analysis confirmed its sensitivity to antibiotics such as ampicillin, erythromycin, and tetracycline, and its hemolytic activity displayed an α-hemoly-sis pattern. These findings confirm L. plantarum LP8 as a safeand effective probiotic candidate with significant potential for antimicrobial and biotechnological applications.http://www.sciencedirect.com/science/article/pii/S2352340925002872Lactiplantibacillus plantarumWhole genome sequencingProbioticsDraft genome sequenceSafety assessmentAntimicrobial resistance gene |
| spellingShingle | Nirusna Jehma Nattarika Chaichana Jirasa Boonsan Kamonnut Singkhamanan Monwadee Wonglapsuwan Rattanaruji Pomwised Sarunyou Chusri Komwit Surachat Characterization and genomic analysis of Lactiplantibacillus plantarum LP8 as a probiotic candidate for medical applicationsNCBI Data in Brief Lactiplantibacillus plantarum Whole genome sequencing Probiotics Draft genome sequence Safety assessment Antimicrobial resistance gene |
| title | Characterization and genomic analysis of Lactiplantibacillus plantarum LP8 as a probiotic candidate for medical applicationsNCBI |
| title_full | Characterization and genomic analysis of Lactiplantibacillus plantarum LP8 as a probiotic candidate for medical applicationsNCBI |
| title_fullStr | Characterization and genomic analysis of Lactiplantibacillus plantarum LP8 as a probiotic candidate for medical applicationsNCBI |
| title_full_unstemmed | Characterization and genomic analysis of Lactiplantibacillus plantarum LP8 as a probiotic candidate for medical applicationsNCBI |
| title_short | Characterization and genomic analysis of Lactiplantibacillus plantarum LP8 as a probiotic candidate for medical applicationsNCBI |
| title_sort | characterization and genomic analysis of lactiplantibacillus plantarum lp8 as a probiotic candidate for medical applicationsncbi |
| topic | Lactiplantibacillus plantarum Whole genome sequencing Probiotics Draft genome sequence Safety assessment Antimicrobial resistance gene |
| url | http://www.sciencedirect.com/science/article/pii/S2352340925002872 |
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