PRMT1-methylated MSX1 phase separates to control palate development

Abstract Little is known about the regulation and function of phase separation in craniofacial developmental disorders. MSX1 mutations are associated with human cleft palate, the most common craniofacial birth defect. Here, we show that MSX1 phase separation is a vertebrate-conserved mechanism under...

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Main Authors: Li Meng, Yucheng Jiang, Jiawen You, Yatao Chen, Shuyu Guo, Liming Chen, Junqing Ma
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-56327-6
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author Li Meng
Yucheng Jiang
Jiawen You
Yatao Chen
Shuyu Guo
Liming Chen
Junqing Ma
author_facet Li Meng
Yucheng Jiang
Jiawen You
Yatao Chen
Shuyu Guo
Liming Chen
Junqing Ma
author_sort Li Meng
collection DOAJ
description Abstract Little is known about the regulation and function of phase separation in craniofacial developmental disorders. MSX1 mutations are associated with human cleft palate, the most common craniofacial birth defect. Here, we show that MSX1 phase separation is a vertebrate-conserved mechanism underlying embryonic palatal fusion. Notably, MSX1 phase separation is triggered by its intrinsically disordered protein region (IDR) and regulated by PRMT1-catalyzed methylation, specifically asymmetric dimethylation of arginine in the MSX1 IDR including R150 and R157. Hypomethylated MSX1 due to methylation site mutations and PRMT1 deficiency consistently leads to abnormal MSX1 phase separation to form less dynamic gel-like condensates, resulting in proliferation defects of embryonic palatal mesenchymal cells and cleft palate. Besides, high frequency mutations in the MSX1 IDR, especially R157S, have been identified in humans with cleft palate. Overall, we reveal the function and regulatory pathway of MSX1 phase separation as a conserved mechanism underlying cleft palate, providing a proof-of-concept example of a phenotype-associated phase separation mechanism associated with craniofacial developmental disorders.
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institution Kabale University
issn 2041-1723
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publishDate 2025-01-01
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spelling doaj-art-00c12d16d8e84fe9bf8eaa87dde513f52025-01-26T12:41:21ZengNature PortfolioNature Communications2041-17232025-01-0116111710.1038/s41467-025-56327-6PRMT1-methylated MSX1 phase separates to control palate developmentLi Meng0Yucheng Jiang1Jiawen You2Yatao Chen3Shuyu Guo4Liming Chen5Junqing Ma6State Key Laboratory Cultivation Base of Research, Prevention and Treatment for Oral Diseases, Nanjing Medical UniversityState Key Laboratory Cultivation Base of Research, Prevention and Treatment for Oral Diseases, Nanjing Medical UniversityState Key Laboratory Cultivation Base of Research, Prevention and Treatment for Oral Diseases, Nanjing Medical UniversityDepartment of Biochemistry, School of Life Sciences, Nanjing Normal UniversityState Key Laboratory Cultivation Base of Research, Prevention and Treatment for Oral Diseases, Nanjing Medical UniversityDepartment of Biochemistry, School of Life Sciences, Nanjing Normal UniversityState Key Laboratory Cultivation Base of Research, Prevention and Treatment for Oral Diseases, Nanjing Medical UniversityAbstract Little is known about the regulation and function of phase separation in craniofacial developmental disorders. MSX1 mutations are associated with human cleft palate, the most common craniofacial birth defect. Here, we show that MSX1 phase separation is a vertebrate-conserved mechanism underlying embryonic palatal fusion. Notably, MSX1 phase separation is triggered by its intrinsically disordered protein region (IDR) and regulated by PRMT1-catalyzed methylation, specifically asymmetric dimethylation of arginine in the MSX1 IDR including R150 and R157. Hypomethylated MSX1 due to methylation site mutations and PRMT1 deficiency consistently leads to abnormal MSX1 phase separation to form less dynamic gel-like condensates, resulting in proliferation defects of embryonic palatal mesenchymal cells and cleft palate. Besides, high frequency mutations in the MSX1 IDR, especially R157S, have been identified in humans with cleft palate. Overall, we reveal the function and regulatory pathway of MSX1 phase separation as a conserved mechanism underlying cleft palate, providing a proof-of-concept example of a phenotype-associated phase separation mechanism associated with craniofacial developmental disorders.https://doi.org/10.1038/s41467-025-56327-6
spellingShingle Li Meng
Yucheng Jiang
Jiawen You
Yatao Chen
Shuyu Guo
Liming Chen
Junqing Ma
PRMT1-methylated MSX1 phase separates to control palate development
Nature Communications
title PRMT1-methylated MSX1 phase separates to control palate development
title_full PRMT1-methylated MSX1 phase separates to control palate development
title_fullStr PRMT1-methylated MSX1 phase separates to control palate development
title_full_unstemmed PRMT1-methylated MSX1 phase separates to control palate development
title_short PRMT1-methylated MSX1 phase separates to control palate development
title_sort prmt1 methylated msx1 phase separates to control palate development
url https://doi.org/10.1038/s41467-025-56327-6
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