Trey Ideker

Trey Ideker is a professor of medicine and bioengineering at the University of California, San Diego. He is the director of the National Resource for Network Biology, the San Diego Center for Systems Biology, and the Cancer Cell Map Initiative. He uses genome-scale measurements to construct network models of cellular processes and disease. Provided by Wikipedia
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  1. 1
    Genome-wide fitness and expression profiling implicate Mga2 in adaptation to hydrogen peroxide.

    Genome-wide fitness and expression profiling implicate Mga2 in adaptation to hydrogen peroxide. by Ryan Kelley, Trey Ideker

    Published 2009-05-01
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  2. 2
    Differential network biology

    Differential network biology by Trey Ideker, Nevan J Krogan

    Published 2012-01-01
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  3. 3
    Artificial Intelligence-Powered Insights into Polyclonality and Tumor Evolution

    Artificial Intelligence-Powered Insights into Polyclonality and Tumor Evolution by Hong Zhao, Trey Ideker, Stephen T. C. Wong

    Published 2025-01-01
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  4. 4
    Functional maps of protein complexes from quantitative genetic interaction data.

    Functional maps of protein complexes from quantitative genetic interaction data. by Sourav Bandyopadhyay, Ryan Kelley, Nevan J Krogan, Trey Ideker

    Published 2008-04-01
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  5. 5
    A genotype-to-drug diffusion model for generation of tailored anti-cancer small molecules

    A genotype-to-drug diffusion model for generation of tailored anti-cancer small molecules by Hyunho Kim, Bongsung Bae, Minsu Park, Yewon Shin, Trey Ideker, Hojung Nam

    Published 2025-07-01
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  6. 6
    Inferring pathway activity toward precise disease classification.

    Inferring pathway activity toward precise disease classification. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee

    Published 2008-11-01
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  7. 7
    Integrated assessment and prediction of transcription factor binding.

    Integrated assessment and prediction of transcription factor binding. by Andreas Beyer, Christopher Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker

    Published 2006-06-01
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  8. 8
    State of the interactomes: an evaluation of molecular networks for generating biological insights

    State of the interactomes: an evaluation of molecular networks for generating biological insights by Sarah N Wright, Scott Colton, Leah V Schaffer, Rudolf T Pillich, Christopher Churas, Dexter Pratt, Trey Ideker

    Published 2024-12-01
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  9. 9
    Genome-wide association data reveal a global map of genetic interactions among protein complexes.

    Genome-wide association data reveal a global map of genetic interactions among protein complexes. by Gregory Hannum, Rohith Srivas, Aude Guénolé, Haico van Attikum, Nevan J Krogan, Richard M Karp, Trey Ideker

    Published 2009-12-01
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  10. 10
    Host cell factors in HIV replication: meta-analysis of genome-wide studies.

    Host cell factors in HIV replication: meta-analysis of genome-wide studies. by Frederic D Bushman, Nirav Malani, Jason Fernandes, Iván D'Orso, Gerard Cagney, Tracy L Diamond, Honglin Zhou, Daria J Hazuda, Amy S Espeseth, Renate König, Sourav Bandyopadhyay, Trey Ideker, Stephen P Goff, Nevan J Krogan, Alan D Frankel, John A T Young, Sumit K Chanda

    Published 2009-05-01
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  11. 11
    Evolutionarily conserved herpesviral protein interaction networks.

    Evolutionarily conserved herpesviral protein interaction networks. by Even Fossum, Caroline C Friedel, Seesandra V Rajagopala, Björn Titz, Armin Baiker, Armin Baiker, Tina Schmidt, Theo Kraus, Thorsten Stellberger, Christiane Rutenberg, Silpa Suthram, Sourav Bandyopadhyay, Dietlind Rose, Albrecht von Brunn, Mareike Uhlmann, Christine Zeretzke, Yu-An Dong, Hélène Boulet, Manfred Koegl, Susanne M Bailer, Ulrich Koszinowski, Trey Ideker, Peter Uetz, Ralf Zimmer, Jürgen Haas

    Published 2009-09-01
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  12. 12
    Improving breast cancer survival analysis through competition-based multidimensional modeling.

    Improving breast cancer survival analysis through competition-based multidimensional modeling. by Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A Logsdon, Gaurav Pandey, Benjamin A Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H Mecham, Oscar M Rueda, Jorg Tost, Christina Curtis, Mariano J Alvarez, Vessela N Kristensen, Samuel Aparicio, Anne-Lise Børresen-Dale, Carlos Caldas, Andrea Califano, Stephen H Friend, Trey Ideker, Eric E Schadt, Gustavo A Stolovitzky, Adam A Margolin

    Published 2013-01-01
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  13. 13
    Global siRNA screen identifies human host factors critical for SARS-CoV-2 replication and late stages of infection.

    Global siRNA screen identifies human host factors critical for SARS-CoV-2 replication and late stages of infection. by Xin Yin, Yuan Pu, Shuofeng Yuan, Lars Pache, Christopher Churas, Stuart Weston, Laura Riva, Lacy M Simons, William J Cisneros, Thomas Clausen, Grace Biddle, Simon Doss-Gollin, Meagan Deming, Paul D De Jesus, Ha Na Kim, Daniel Fuentes, John M Whitelock, Jeffrey D Esko, Megan S Lord, Ignacio Mena, Adolfo García-Sastre, Judd F Hultquist, Matthew B Frieman, Trey Ideker, Dexter Pratt, Laura Martin-Sancho, Sumit K Chanda

    Published 2025-06-01
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