The changing epidemiology of Plasmodium vivax: Insights from conventional and novel surveillance tools. by Sarah Auburn, Qin Cheng, Jutta Marfurt, Ric N Price

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Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia. by Sisay Getachew, Sheren To, Hidayat Trimarsanto, Kamala Thriemer, Taane G Clark, Beyene Petros, Abraham Aseffa, Ric N Price, Sarah Auburn

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Molecular Epidemiology of P. vivax in Iran: High Diversity and Complex Sub-Structure Using Neutral Markers, but No Evidence of Y976F Mutation at pvmdr1. by Yaghoob Hamedi, Khojasteh Sharifi-Sarasiabi, Farzaneh Dehghan, Reza Safari, Sheren To, Irene Handayuni, Hidayat Trimarsanto, Ric N Price, Sarah Auburn

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G6PD Deficiency and Antimalarial Efficacy for Uncomplicated Malaria in Bangladesh: A Prospective Observational Study. by Benedikt Ley, Mohammad Shafiul Alam, Kamala Thriemer, Mohammad Sharif Hossain, Mohammad Golam Kibria, Sarah Auburn, Eugenie Poirot, Ric N Price, Wasif Ali Khan

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Validating discovered Cis-acting regulatory genetic variants: application of an allele specific expression approach to HapMap populations. by Susana Campino, Julian Forton, Srilakshmi Raj, Bert Mohr, Sarah Auburn, Andrew Fry, Valentina D Mangano, Claire Vandiedonck, Anna Richardson, Kirk Rockett, Taane G Clark, Dominic P Kwiatkowski

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Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa. by Hampate Ba, Sarah Auburn, Christopher G Jacob, Sonia Goncalves, Craig W Duffy, Lindsay B Stewart, Ric N Price, Yacine Boubou Deh, Mamadou Yero Diallo, Abderahmane Tandia, Dominic P Kwiatkowski, David J Conway

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Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections. by Zuleima Pava, Rintis Noviyanti, Irene Handayuni, Hidayat Trimarsanto, Leily Trianty, Faustina H Burdam, Enny Kenangalem, Retno A S Utami, Yusrifar K Tirta, Farah Coutrier, Jeanne R Poespoprodjo, Ric N Price, Jutta Marfurt, Sarah Auburn

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Further evidence supporting a role for gs signal transduction in severe malaria pathogenesis. by Sarah Auburn, Andrew E Fry, Taane G Clark, Susana Campino, Mahamadou Diakite, Angela Green, Anna Richardson, Muminatou Jallow, Fatou Sisay-Joof, Margaret Pinder, Malcolm E Molyneux, Terrie E Taylor, Kasturi Haldar, Kirk A Rockett, Dominic P Kwiatkowski

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Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data. by Sarah Auburn, Susana Campino, Olivo Miotto, Abdoulaye A Djimde, Issaka Zongo, Magnus Manske, Gareth Maslen, Valentina Mangano, Daniel Alcock, Bronwyn MacInnis, Kirk A Rockett, Taane G Clark, Ogobara K Doumbo, Jean Bosco Ouédraogo, Dominic P Kwiatkowski

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Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination. by Rintis Noviyanti, Farah Coutrier, Retno A S Utami, Hidayat Trimarsanto, Yusrifar K Tirta, Leily Trianty, Andreas Kusuma, Inge Sutanto, Ayleen Kosasih, Rita Kusriastuti, William A Hawley, Ferdinand Laihad, Neil Lobo, Jutta Marfurt, Taane G Clark, Ric N Price, Sarah Auburn

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Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients. by Timothy Robinson, Susana G Campino, Sarah Auburn, Samuel A Assefa, Spencer D Polley, Magnus Manske, Bronwyn MacInnis, Kirk A Rockett, Gareth L Maslen, Mandy Sanders, Michael A Quail, Peter L Chiodini, Dominic P Kwiatkowski, Taane G Clark, Colin J Sutherland

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VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax populations. by Hidayat Trimarsanto, Ernest D Benavente, Rintis Noviyanti, Retno Ayu Setya Utami, Leily Trianty, Zuleima Pava, Sisay Getachew, Jung-Yeon Kim, Youn-Kyoung Goo, Sonam Wangchuck, Yaobao Liu, Qi Gao, Simone Dowd, Qin Cheng, Taane G Clark, Ric N Price, Sarah Auburn

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An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing. by Sarah Auburn, Susana Campino, Taane G Clark, Abdoulaye A Djimde, Issaka Zongo, Robert Pinches, Magnus Manske, Valentina Mangano, Daniel Alcock, Elisa Anastasi, Gareth Maslen, Bronwyn Macinnis, Kirk Rockett, David Modiano, Christopher I Newbold, Ogobara K Doumbo, Jean Bosco Ouédraogo, Dominic P Kwiatkowski

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Submicroscopic and Asymptomatic Plasmodium Parasitaemia Associated with Significant Risk of Anaemia in Papua, Indonesia. by Zuleima Pava, Faustina H Burdam, Irene Handayuni, Leily Trianty, Retno A S Utami, Yusrifar Kharisma Tirta, Enny Kenangalem, Daniel Lampah, Andreas Kusuma, Grennady Wirjanata, Steven Kho, Julie A Simpson, Sarah Auburn, Nicholas M Douglas, Rintis Noviyanti, Nicholas M Anstey, Jeanne R Poespoprodjo, Jutta Marfurt, Ric N Price

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Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing. by Sarah Auburn, Jutta Marfurt, Gareth Maslen, Susana Campino, Valentin Ruano Rubio, Magnus Manske, Barbara Machunter, Enny Kenangalem, Rintis Noviyanti, Leily Trianty, Boni Sebayang, Grennady Wirjanata, Kanlaya Sriprawat, Daniel Alcock, Bronwyn Macinnis, Olivo Miotto, Taane G Clark, Bruce Russell, Nicholas M Anstey, François Nosten, Dominic P Kwiatkowski, Ric N Price

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Lack of association of interferon regulatory factor 1 with severe malaria in affected child-parental trio studies across three African populations. by Valentina D Mangano, Taane G Clark, Sarah Auburn, Susana Campino, Mahamadou Diakite, Andrew E Fry, Angela Green, Anna Richardson, Muminatou Jallow, Fatou Sisay-Joof, Margaret Pinder, Michael J Griffiths, Charles Newton, Norbert Peshu, Thomas N Williams, Kevin Marsh, Malcolm E Molyneux, Terrie E Taylor, David Modiano, Dominic P Kwiatkowski, Kirk A Rockett

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Genomic epidemiology of Plasmodium knowlesi reveals putative genetic drivers of adaptation in Malaysia. by Jacob A F Westaway, Ernest Diez Benavente, Sarah Auburn, Michal Kucharski, Nicolas Aranciaga, Sourav Nayak, Timothy William, Giri S Rajahram, Kim A Piera, Kamil Braima, Angelica F Tan, Danshy A Alaza, Bridget E Barber, Chris Drakeley, Roberto Amato, Edwin Sutanto, Hidayat Trimarsanto, Jenarun Jelip, Nicholas M Anstey, Zbynek Bozdech, Matthew Field, Matthew J Grigg

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Emergence of artemisinin-resistant Plasmodium falciparum with kelch13 C580Y mutations on the island of New Guinea. by Olivo Miotto, Makoto Sekihara, Shin-Ichiro Tachibana, Masato Yamauchi, Richard D Pearson, Roberto Amato, Sonia Gonçalves, Somya Mehra, Rintis Noviyanti, Jutta Marfurt, Sarah Auburn, Ric N Price, Ivo Mueller, Mie Ikeda, Toshiyuki Mori, Makoto Hirai, Livingstone Tavul, Manuel W Hetzel, Moses Laman, Alyssa E Barry, Pascal Ringwald, Jun Ohashi, Francis Hombhanje, Dominic P Kwiatkowski, Toshihiro Mita

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Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay. by Susana Campino, Sarah Auburn, Katja Kivinen, Issaka Zongo, Jean-Bosco Ouedraogo, Valentina Mangano, Abdoulaye Djimde, Ogobara K Doumbo, Steven M Kiara, Alexis Nzila, Steffen Borrmann, Kevin Marsh, Pascal Michon, Ivo Mueller, Peter Siba, Hongying Jiang, Xin-Zhuan Su, Chanaki Amaratunga, Duong Socheat, Rick M Fairhurst, Mallika Imwong, Timothy Anderson, François Nosten, Nicholas J White, Rhian Gwilliam, Panos Deloukas, Bronwyn MacInnis, Christopher I Newbold, Kirk Rockett, Taane G Clark, Dominic P Kwiatkowski

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Microhaplotype deep sequencing assays to capture Plasmodium vivax infection lineages by Mariana Kleinecke, Edwin Sutanto, Angela Rumaseb, Kian Soon Hoon, Hidayat Trimarsanto, Ashley Osborne, Paulo Manrique, Trent Peters, David Hawkes, Ernest Diez Benavente, Georgia Whitton, Sasha V. Siegel, Richard D. Pearson, Roberto Amato, Anjana Rai, Nguyen Thanh Thuy Nhien, Hoang Chau Nguyen, Ashenafi Assefa, Tamiru S. Degaga, Dagimawie Tadesse Abate, Awab Ghulam Rahim, Ayodhia Pitaloka Pasaribu, Inge Sutanto, Mohammad Shafiul Alam, Zuleima Pava, Tatiana Lopera-Mesa, Diego Echeverry, Tim William, Nicholas M. Anstey, Matthew J. Grigg, Nicholas P. Day, Nicholas J. White, Dominic P. Kwiatkowski, Aimee R. Taylor, Rintis Noviyanti, Daniel Neafsey, Ric N. Price, Sarah Auburn

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