Jens Nielsen

Nielsen in 2025 Jens Nielsen is the CEO of BioInnovation Institute, Copenhagen, Denmark, and professor of systems biology at Chalmers University of Technology, Gothenburg, Sweden. He is also an adjunct professor at the Danish Technical University and the University of Copenhagen. Nielsen is the most cited researcher in the field of metabolic engineering, and he is the most cited researcher in Biology and Biochemistry in Sweden and Denmark (top 5 in Europe). He is the only foreign member of all three academies in the US (Science, Engineering and Medicine) and he is also foreign member of the Chinese Academy of Engineering. He was the founding president of the International Metabolic Engineering Society. He has additionally founded several biotech companies. Provided by Wikipedia
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  1. 1
    Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger

    Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger by Mikael Rørdam Andersen, Michael Lynge Nielsen, Jens Nielsen

    Published 2008-03-01
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  2. 2
    A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism.

    A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism. by Linnea Österberg, Iván Domenzain, Julia Münch, Jens Nielsen, Stefan Hohmann, Marija Cvijovic

    Published 2021-04-01
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  3. 3
    Machine learning-based investigation of the cancer protein secretory pathway.

    Machine learning-based investigation of the cancer protein secretory pathway. by Rasool Saghaleyni, Azam Sheikh Muhammad, Pramod Bangalore, Jens Nielsen, Jonathan L Robinson

    Published 2021-04-01
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  4. 4
    Sources of variation in cell-type RNA-Seq profiles.

    Sources of variation in cell-type RNA-Seq profiles. by Johan Gustafsson, Felix Held, Jonathan L Robinson, Elias Björnson, Rebecka Jörnsten, Jens Nielsen

    Published 2020-01-01
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  5. 5
    Transcriptomics resources of human tissues and organs

    Transcriptomics resources of human tissues and organs by Mathias Uhlén, Björn M Hallström, Cecilia Lindskog, Adil Mardinoglu, Fredrik Pontén, Jens Nielsen

    Published 2016-04-01
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  6. 6
    Modular deregulation of central carbon metabolism for efficient xylose utilization in Saccharomyces cerevisiae

    Modular deregulation of central carbon metabolism for efficient xylose utilization in Saccharomyces cerevisiae by Xiaowei Li, Yanyan Wang, Xin Chen, Leon Eisentraut, Chunjun Zhan, Jens Nielsen, Yun Chen

    Published 2025-05-01
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  7. 7
    Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator

    Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator by Renata Usaite, Michael C Jewett, Ana Paula Oliveira, John R Yates, Lisbeth Olsson, Jens Nielsen

    Published 2009-11-01
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  8. 8
    Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints

    Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints by Benjamín J Sánchez, Cheng Zhang, Avlant Nilsson, Petri‐Jaan Lahtvee, Eduard J Kerkhoven, Jens Nielsen

    Published 2017-08-01
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  9. 9
    The gut microbiota modulates host amino acid and glutathione metabolism in mice

    The gut microbiota modulates host amino acid and glutathione metabolism in mice by Adil Mardinoglu, Saeed Shoaie, Mattias Bergentall, Pouyan Ghaffari, Cheng Zhang, Erik Larsson, Fredrik Bäckhed, Jens Nielsen

    Published 2015-10-01
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  10. 10
    Proteome constraints reveal targets for improving microbial fitness in nutrient‐rich environments

    Proteome constraints reveal targets for improving microbial fitness in nutrient‐rich environments by Yu Chen, Eunice van Pelt‐KleinJan, Berdien van Olst, Sieze Douwenga, Sjef Boeren, Herwig Bachmann, Douwe Molenaar, Jens Nielsen, Bas Teusink

    Published 2021-04-01
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  11. 11
    Investigating formate tolerance mechanisms in Saccharomyces cerevisiae and its application

    Investigating formate tolerance mechanisms in Saccharomyces cerevisiae and its application by Kai Wang, Yining Liu, Zhuoheng Wu, Yilu Wu, Haoran Bi, Yanhui Liu, Meng Wang, Biqiang Chen, Jens Nielsen, Zihe Liu, Tianwei Tan

    Published 2023-09-01
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  12. 12
    Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

    Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection by Hongzhong Lu, Feiran Li, Le Yuan, Iván Domenzain, Rosemary Yu, Hao Wang, Gang Li, Yu Chen, Boyang Ji, Eduard J Kerkhoven, Jens Nielsen

    Published 2021-10-01
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  13. 13
    Integration of clinical data with a genome‐scale metabolic model of the human adipocyte

    Integration of clinical data with a genome‐scale metabolic model of the human adipocyte by Adil Mardinoglu, Rasmus Agren, Caroline Kampf, Anna Asplund, Intawat Nookaew, Peter Jacobson, Andrew J Walley, Philippe Froguel, Lena M Carlsson, Mathias Uhlen, Jens Nielsen

    Published 2013-03-01
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  14. 14
    Matrix regulation: a plug-and-tune method for combinatorial regulation in Saccharomyces cerevisiae

    Matrix regulation: a plug-and-tune method for combinatorial regulation in Saccharomyces cerevisiae by Xiaolong Teng, Zibai Wang, Yueping Zhang, Binhao Wang, Guiping Gong, Jinmiao Hu, Yifan Zhu, Baoyi Peng, Junyang Wang, James Chen, Shuobo Shi, Jens Nielsen, Zihe Liu

    Published 2025-08-01
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  15. 15
    Extensively acquired antimicrobial-resistant bacteria restructure the individual microbial community in post-antibiotic conditions

    Extensively acquired antimicrobial-resistant bacteria restructure the individual microbial community in post-antibiotic conditions by Jae Woo Baek, Songwon Lim, Nayeon Park, Byeongsop Song, Nikhil Kirtipal, Jens Nielsen, Adil Mardinoglu, Saeed Shoaie, Jae-il Kim, Jang Won Son, Ara Koh, Sunjae Lee

    Published 2025-05-01
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  16. 16
    Vaccine effectiveness against SARS-CoV-2 reinfection during periods of Alpha, Delta, or Omicron dominance: A Danish nationwide study.

    Vaccine effectiveness against SARS-CoV-2 reinfection during periods of Alpha, Delta, or Omicron dominance: A Danish nationwide study. by Katrine Finderup Nielsen, Ida Rask Moustsen-Helms, Astrid Blicher Schelde, Mie Agermose Gram, Hanne-Dorthe Emborg, Jens Nielsen, Christian Holm Hansen, Michael Asger Andersen, Marianna Meaidi, Jan Wohlfahrt, Palle Valentiner-Branth

    Published 2022-11-01
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  17. 17
    Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors

    Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors by Alireza Azimi, Stefano Caramuta, Brinton Seashore‐Ludlow, Johan Boström, Jonathan L Robinson, Fredrik Edfors, Rainer Tuominen, Kristel Kemper, Oscar Krijgsman, Daniel S Peeper, Jens Nielsen, Johan Hansson, Suzanne Egyhazi Brage, Mikael Altun, Mathias Uhlen, Gianluca Maddalo

    Published 2018-03-01
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  18. 18
    Molecular biology for green recovery-A call for action.

    Molecular biology for green recovery-A call for action. by Marta Rodríguez-Martínez, Jens Nielsen, Sam Dupont, Jessica Vamathevan, Beverley J Glover, Lindsey C Crosswell, Brendan Rouse, Ben F Luisi, Chris Bowler, Susan M Gasser, Detlev Arendt, Tobias J Erb, Victor de Lorenzo, Edith Heard, Kiran Raosaheb Patil

    Published 2022-04-01
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  19. 19
    Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

    Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients by Mujdat Zeybel, Ozlem Altay, Muhammad Arif, Xiangyu Li, Hong Yang, Claudia Fredolini, Murat Akyildiz, Burcin Saglam, Mehmet Gokhan Gonenli, Dilek Ural, Woonghee Kim, Jochen M Schwenk, Cheng Zhang, Saeed Shoaie, Jens Nielsen, Mathias Uhlén, Jan Borén, Adil Mardinoglu

    Published 2021-10-01
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  20. 20
    Identifying common trends and ecosystem states to inform Gulf of Alaska ecosystem-based fisheries management

    Identifying common trends and ecosystem states to inform Gulf of Alaska ecosystem-based fisheries management by Bridget E. Ferriss, Mary E. Hunsicker, Eric J. Ward, Michael A. Litzow, Lauren Rogers, Matt Callahan, Wei Cheng, Seth L. Danielson, Brie Drummond, Emily Fergusson, Christine Gabriele, Kyle Hebert, Russell R. Hopcroft, Jens Nielsen, Kally Spalinger, William T. Stockhausen, Wesley W. Strasburger, Shannon Whelan

    Published 2025-01-01
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