Integrating phylogeographic and phenotypic evidence to delimit deep evolutionary lineages in the Dryophytes japonicus species complex, with an assessment of their conservation need... by Amaël Borzée, Yikweon Jang, Siti N. Othman, Jordy Groffen, Irina V. Maslova, Zoljargal Purevdorj, Kiyomi Yasumiba, Tomohiko Shimada, Yoonjung Yi, Natalya Alekseevna Schepina, Desiree Andersen, Yoonhyuk Bae, Ikuo Miura, Christophe Dufresnes

“…In this study, we assessed the genetic, genomic, morphological, and acoustic diversity and differentiation within the D. japonicus complex to propose taxonomic arrangements and assess taxon-specific threats for each defined clade. Analyses of four mtDNA genes and 42.8 kb nuclear loci obtained by RAD-sequencing (RAD-seq) confirmed two distinct species-level clades that diverged ~6 Mya, one provisionally assigned to D. japonicus in southern Japan and mainland Asia and the other unnamed (D. cf. japonicus) in northern Japan and adjacent Russian islands. …”
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Assembly-free reads accurate identification (AFRAID) approach outperforms other methods of DNA barcoding in the walnut family (Juglandaceae) by Yanlei Liu, Kai Chen, Lihu Wang, Xinqiang Yu, Chao Xu, Zhili Suo, Shiliang Zhou, Shuo Shi, Wenpan Dong

“…We found that species identification rates were highest when whole chloroplast genomes were used, followed by taxon-specific DNA barcodes, and then universal DNA barcodes. …”
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A narrow endemic plant: evaluating population dynamics and conservation strategies by Nerea Alvite, Elisa Gago Moldes, Sergio Roiloa, Rodolfo Barreiro

“…It is categorized as Endangered on the IUCN Red List and is a priority taxon under the EU Habitats Directive. Nevertheless, the only comprehensive census of this subspecies was conducted in 2009. …”
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<i>Phytophthora</i> Species and Their Associations with Chaparral and Oak Woodland Vegetation in Southern California by Sebastian N. Fajardo, Tyler B. Bourret, Susan J. Frankel, David M. Rizzo

“…<i>cadmea</i> (subclade 7a), <i>P</i>. taxon ‘oakpath’ (subclade 8e, first reported in this study), and several clade-6 species, including <i>P. crassamura</i>. …”
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Enzyme supplementation (phytase and xylanase) improves low quality diets in Nile tilapia by Roel M. Maas, Fotini Kokou, Marc C.J. Verdegem, Johan W. Schrama

“…Distal VFA levels and the acetate-producing core taxon Cetobacterium somerae increased with enzyme supplementation, mostly in the control diet. …”
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Honoring the Afro-Colombian musical culture with the naming of Epipedobates currulao sp. nov. (Anura, Dendrobatidae), a frog from the Pacific rainforests by Mileidy Betancourth-Cundar, Juan Camilo Ríos-Orjuela, Andrew J. Crawford, David C. Cannatella, Rebecca D. Tarvin

“…This species inhabits lowland forests from 0–260 m a.s.l. This taxon differs from congeners by having a combination of bright yellow blotches in the dorsal anterior region of the thigh and upper arm, homogenous dark-brown dorsal coloration, and advertisement calls of long duration and many pulses. …”
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De-biasing microbiome sequencing data: bacterial morphology-based correction of extraction bias and correlates of chimera formation by Luise Rauer, Amedeo De Tomassi, Christian L. Müller, Claudia Hülpüsch, Claudia Traidl-Hoffmann, Matthias Reiger, Avidan U. Neumann

“…Comparing the microbiome composition of the cell mocks to corresponding DNA mocks revealed taxon-specific protocol-dependent extraction bias. …”
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Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov. by Conrad Trollip, Angus J. Carnegie, Quang Dinh, Jatinder Kaur, David Smith, Ross Mann, Brendan Rodoni, Jacqueline Edwards

“…Whole genome sequencing (WGS) of representative isolates from each taxon was performed to obtain high-quality sequence data for multi-locus phylogenetic analysis. …”
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Molecular genetic and morphological characteristics of Micractinium thermotolerans and M. inermum (Trebouxiophyceae, Chlorophyta) from pyroclastic deposits of the Kamchatka Peninsu... by R. Z. Sushchenko, V. Yu. Nikulin, V. B. Bagmet, A. Yu. Nikulin

“…Identification of the strains was carried out within the framework of an integrative approach using microscopic and molecular genetic methods, including preliminary taxon identification, obtaining nucleotide sequences of the small subunit and the internal transcribed spacer rRNA, reconstruction of phylogenetic trees and secondary structures of the ITS1 and ITS2 rRNA regions. …”
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Cultures as types and the utility of viable specimens for fungal nomenclature by Andrey Yurkov, Cobus M. Visagie, Pedro W. Crous, Akira Hashimoto, Christiane Baschien, Dominik Begerow, Martin Kemler, Nathan Schoutteten, Marc Stadler, Nalin N. Wijayawardene, Kevin D. Hyde, Ning Zhang, Teun Boekhout, ICTF Yeast Working Group, Tom W. May, Marco Thines, David L. Hawksworth

“…Abstract The debates over the requirement of the International Code of Nomenclature for algae, fungi, and plants (ICNafp) for a viable specimen to represent the name-bearing type material for a species or infraspecific taxon have a long history. Taxonomy of fungi commonly studied as living cultures exemplified by yeasts and moulds, strongly depend on viable reference material. …”
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Life-history traits, pace of life and dispersal among and within five species of Trichogramma wasps: a comparative analysis by Guicharnaud, Chloé, Groussier, Géraldine, Beranger, Erwan, Lamy, Laurent, Vercken, Elodie, Dahirel, Maxime

“…Such axes, along with their potential associations or syndromes with other traits such as dispersal, are however not universal; in particular, support for their presence may be taxon and taxonomic scale-dependent. Knowing about such life-history strategies may be especially important for understanding eco-evolutionary dynamics, as these trait syndromes may constrain trait variation or be correlated with other traits. …”
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Small molecule metabolites drive plant rhizosphere microbial community assembly patterns by Yanwei Ma, Heqi Wang, Yalong Kang, Tao Wen

“…The genus Rhizobium, significantly associated with βNTI (R = 0.25, p = 0.009), emerged as a keystone taxon shaping community structure. Soil culture experiments further validated that small molecule metabolites can modulate microbial community assembly. …”
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Modeling compositional heterogeneity resolves deep phylogeny of flowering plants by Yongli Wang, Yan-Da Li, Shuo Wang, Erik Tihelka, Michael S. Engel, Chenyang Cai

“…Recent phylogenomic studies based on large-scale data from plastid, mitochondrial, or nuclear transcriptomes/genomes and increased taxon sampling have provided unprecedent resolution into the phylogeny of flowering plants. …”
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Caracterización morfológica y molecular de Symbiodinium natans-clado A de vida libre (Dinophyceae) de la Bahía de La Paz, Golfo de California by Ana E Ramos-Santiago, Ignacio Leyva-Valencia, Yuri B Okolodkov, Christine J Band-Schmidt

“…La combinación de métodos permitió la identificación de las cepas como Symbiodinium natans-clado A. Este taxón es un grupo de organismos de vida libre, lo que facilitó el cultivo de las cepas en el laboratorio. …”
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Six new species of zombie-ant fungi from Yunnan in China by Dexiang Tang, Ou Huang, Weiqiu Zou, Yuanbing Wang, Yao Wang, Quanying Dong, Tao Sun, Gang Yang, Hong Yu

“…Descriptions and illustrations for six taxon were provided. Five of these species were collected from the subtropical monsoon evergreen broad-leaf forest, and one was collected from the rainforest and subtropical monsoon evergreen broad-leaf forest. …”
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Discovery of a New Cyanobacterial Genus (<em>Paludothrix</em> gen. nov.) from the Sanyang Wetland in Eastern China, Reflecting the Latest Taxonomic Status in Coleofasciculaceae by Yangyang Wu, Yao Cheng, He Zhang, Ruozhen Geng, Peng Xiao, Baiyu Cui, Renhui Li

“…This research, which is part of a larger investigation into soil biocrust algae diversity in the Sanyang Wetland located in Zhejiang Province, China, introduces a novel taxon of non-heterocystous filamentous cyanobacteria employing a polyphasic approach for cyanobacterial classification, integrating morphological, molecular, ecological, and biogeographical considerations. …”
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A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes by Peter R. Johnston, Luis Quijada, Christopher A. Smith, Hans-Otto Baral, Tsuyoshi Hosoya, Christiane Baschien, Kadri Pärtel, Wen-Ying Zhuang, Danny Haelewaters, Duckchul Park, Steffen Carl, Francesc López-Giráldez, Zheng Wang, Jeffrey P. Townsend

“…The formal taxonomic changes are limited in part because of the ad hoc nature of taxon and specimen selection, based purely on the availability of data. …”
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Crustacean Zooplankton Ingestion of Potentially Toxic <i>Microcystis</i>: In Situ Estimation Using <i>mcyE</i> Gene Gut Content Detection in a Large Temperate Eutrophic Lake by Helen Agasild, Margarita Esmeralda Gonzales Ferraz, Madli Saat, Priit Zingel, Kai Piirsoo, Kätlin Blank, Veljo Kisand, Tiina Nõges, Kristel Panksep

“…In this study, we quantified <i>Microcystis</i>-specific <i>mcyE</i> synthase genes from the gut contents of various cladoceran and copepod taxa to assess the in situ crustacean community and taxon-specific ingestion of potentially toxic <i>Microcystis</i> in Lake Peipsi, a large eutrophic lake in Estonia, Northern Europe. …”
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ZINQ-L: a zero-inflated quantile approach for differential abundance analysis of longitudinal microbiome data by Shuai Li, Runzhe Li, John R. Lee, John R. Lee, Ni Zhao, Wodan Ling

“…A mixed-effects quantile rank-score-based test was proposed for hypothesis testing, which consists of a test in mixed-effects logistic model for the presence-absence status of the investigated taxon, and a series of mixed-effects quantile rank-score tests adjusted for zero inflation given its presence. …”
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Préférence manuelle chez les gibbons by Luca Morino, Makiko Uchikoshi, Fred Bercovitch, William D Hopkins, Tetsuro Matsuzawa

“…Un des problèmes est le manque de données chez certaines espèces-clés comme notamment au sein des hylobatidés, alors que ce taxon est particulièrement intéressant dans ce contexte : 1. ils sont très proches de l’homme et partagent un répertoire vocal complexe, ils pourraient donc partager certaines voies neurologiques pour leur vocalisation complexe ; 2. leur adaptation à l’arboricolie s’associe à des contraintes posturales uniques ; 3. il y a peu de données sur leur latéralité, et celles-ci sont contradictoires. …”
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