An integrated strain-level analytic pipeline utilizing longitudinal metagenomic data

An integrated strain-level analytic pipeline utilizing longitudinal metagenomic data

ABSTRACT With the development of sequencing technology and analytic tools, studying within-species variations enhances the understanding of microbial biological processes. Nevertheless, most existing methods designed for strain-level analysis lack the capability to concurrently assess both strain pr...

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Bibliographic Details
Main Authors: Boyan Zhou, Chan Wang, Gregory Putzel, Jiyuan Hu, Menghan Liu, Fen Wu, Yu Chen, Alejandro Pironti, Huilin Li
Format: Article
Language:English
Published: American Society for Microbiology 2024-11-01
Series:Microbiology Spectrum
Subjects:
microbiome
longitudinal metagenomic data
strain-level analysis
genomic variants
strain dynamics
Online Access:https://journals.asm.org/doi/10.1128/spectrum.01431-24
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