Genomic epidemiology and phenotypic characterisation of Salmonella enterica serovar Panama in Victoria, Australia. by Samriddhi Thakur, Sarah L Baines, Cheryll M Sia, Mary Valcanis, Louise M Judd, Benjamin P Howden, Hayley J Newton, Danielle J Ingle

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Insights from expert elicitation: prioritising pathogens for genome sequencing for Australian public health responseResearch in context by Tehzeeb Zulfiqar, Angeline Ferdinand, Danielle Cribb, Patiyan Andersson, Alireza Zahedi, Kathryn Glass, Son Nghiem, Susan Trevenar, Nhung Mai, Benjamin P. Howden, Martyn D. Kirk

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Distinct adaptation and epidemiological success of different genotypes within Salmonella enterica serovar Dublin by Cheryll M Sia, Rebecca L Ambrose, Mary Valcanis, Patiyan Andersson, Susan A Ballard, Benjamin P Howden, Deborah A Williamson, Jaclyn S Pearson, Danielle J Ingle

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A multi-hospital, clinician-initiated bacterial genomics programme to investigate treatment failure in severe Staphylococcus aureus infections by Stefano G. Giulieri, Marcel Leroi, Diane Daniel, Roy Chean, Katherine Bond, Harry Walker, Natasha E. Holmes, Nomvuyo Mothobi, Adrian Alexander, Adam Jenney, Carolyn Beckett, Andrew Mahony, Kerrie Stevens, Norelle L. Sherry, Benjamin P. Howden

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Transposon-directed insertion-site sequencing (TraDIS) analysis of Enterococcus faecium using nanopore sequencing and a WebAssembly analysis platform by Alexandra L. Krause, Wytamma Wirth, Adrianna M. Turner, Louise Judd, Lucy Li, Willem van Schaik, Benjamin P. Howden, Glen P. Carter, Torsten Seemann, Ryan Wick, Timothy P. Stinear, Andrew H. Buultjens, Ian R. Monk

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BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows by Nikolaos Strepis, Dennis Dollee, Donny Vrins, Kevin Vanneste, Bert Bogaerts, Catherine Carrillo, Amrita Bharat, Kristy Horan, Norelle L. Sherry, Torsten Seemann, Benjamin P. Howden, Saskia Hiltemann, Leonid Chindelevitch, Andrew P. Stubbs, John P. Hays

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Genetic Correlates of Synergy Mechanisms of Daptomycin Plus Fosfomycin in Daptomycin-Susceptible and -Resistant Methicillin-Resistant <i>Staphylococcus aureus</i> (MRSA) by Warren E. Rose, Selvi C. Ersoy, Wessam Abdelhady, Alan R. Dominguez, Jedidiah Ndam Muyah Manna, Jorge N. Artaza, Reetakshi Mishra, Ahmed M. Elsayed, Richard A. Proctor, Sarah L. Baines, Benjamin P. Howden, Nagendra N. Mishra

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Parameters for one health genomic surveillance of Escherichia coli from Australia by Anne E. Watt, Max L. Cummins, Celeste M. Donato, Wytamma Wirth, Ashleigh F. Porter, Patiyan Andersson, Erica Donner, Australian Pathogen Genomics One Health Working Group, Amy V. Jennison, Torsten Seemann, Steven P. Djordjevic, Benjamin P. Howden

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The impact of integrated genomic surveillance on non-typhoidal Salmonella infection in Australia: an ecological studyResearch in context by Son Nghiem, Nhung Mai, My Tran, Danielle M. Cribb, Liliana Bulfone, Patiyan Andersson, Alireza Zahedi, Tuyet Hoang, Tehzeeb Zulfiqar, Angeline Ferdinand, Katie Glass, Martyn D. Kirk, Vitali Sintchenko, Amy V. Jennison, Benjamin P. Howden, Emily Lancsar

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Publisher Correction: Parameters for one health genomic surveillance of Escherichia coli from Australia by Anne E. Watt, Max L. Cummins, Celeste M. Donato, Wytamma Wirth, Ashleigh F. Porter, Patiyan Andersson, Erica Donner, Australian Pathogen Genomics One Health Working Group, Amy V. Jennison, Torsten Seemann, Steven P. Djordjevic, Benjamin P. Howden

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Meningococcal C Disease Outbreak Caused by Multidrug-Resistant Neisseria meningitidis, Fiji by Aneley Getahun Strobel, Aalisha Sahukhan, Anaseini Ratu, Jimaima Kailawadoko, Isireli Koroituku, Shalini Singh, Samuel McEwen, Sakiusa Baleivanualala, Mathilda Wilmot, Silivia Matanitobua, Kerrie Stevens, Anaseini Vesikula, Talica Cabemaiwai, Raquel Cooper, Mere Taufa, Jokaveti Tadrau, Kristy Horan, Daniel Faktaufon, Benjamin P. Howden, Eric Rafai

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Genomic interrogation of invasive group A Streptococcus (iGAS) epidemiology and COVID-19 impacts in Victoria, Australia: a 6-year retrospective studyResearch in context by Jacqueline M. Morris, Jake A. Lacey, Kerrie Stevens, Lamali Sadeesh Kumar, Mathilda Wilmot, Janet Strachan, Marion Easton, Daneeta Hennessy, Tony M. Korman, Andrew J. Daley, Katherine B. Gibney, Adam W.J. Jenney, Steven Y.C. Tong, Benjamin P. Howden, Norelle L. Sherry

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Effects of Decentralized Sequencing on National Listeria monocytogenes Genomic Surveillance, Australia, 2016–2023 by Patiyan Andersson, Sally Dougall, Karolina Mercoulia, Kristy A. Horan, Torsten Seemann, Jake A. Lacey, Tuyet Hoang, Lex E.X. Leong, David Speers, Louise Cooley, Karina Kennedy, Rob Baird, Rikki Graham, Qinning Wang, Avram Levy, Dimitrios Menouhos, Norelle L. Sherry, Susan A. Ballard, Vitali Sintchenko, Amy V. Jennison, Benjamin P. Howden

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South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study. by Hao Chung The, Maia A Rabaa, Duy Pham Thanh, Niall De Lappe, Martin Cormican, Mary Valcanis, Benjamin P Howden, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J Mason, To Nguyen Thi Nguyen, Duong Vu Thuy, Corinne N Thompson, Nguyen Phu Huong Lan, Phat Voong Vinh, Tuyen Ha Thanh, Paul Turner, Poda Sar, Guy Thwaites, Nicholas R Thomson, Kathryn E Holt, Stephen Baker

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Successful management of a multi-species outbreak of carbapenem-resistant organisms in Fiji: a prospective genomics-enhanced investigation and responseResearch in context by Tracey Young-Sharma, Courtney R. Lane, Rodney James, Mathilda Wilmot, Sanjeshni Autar, Kylie Hui, Aneley Getahun Strobel, Jake A. Lacey, Savneel Kumar, Ashlyn Datt, Alvina Lata, Donna Cameron, Norelle L. Sherry, Sisilia Genaro, Timaima Ditukana, Ilisapeci Nabose, Apaitia Goneyali, Elizabeth Bennett, Anisi Kavoa, Shammi Prasad, Alipate Vakamocea, Ana Suka, Prinika Prasad, Farheen Hussein, Chantel Lin, Adam WJ. Jenney, Kirsty Buising, Ravi Naidu, Benjamin P. Howden

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Regulation of airway fumarate by host and pathogen promotes Staphylococcus aureus pneumonia by Ying-Tsun Chen, Zihua Liu, Dario Fucich, Stefano G. Giulieri, Zhe Liu, Ridhima Wadhwa, Gustavo Rios, Henning Henschel, Nupur Tyagi, Françios A. B. Olivier, Ian R. Monk, Shivang S. Shah, Shwetha H. Sridhar, Marija Drikic, Colleen Bianco, Gaurav K. Lohia, Ayesha Z. Beg, Paul J. Planet, Ian A. Lewis, Robert Sebra, Ana Traven, Abderrahman Hachani, Timothy P. Stinear, Benjamin P. Howden, Jeffrey M. Boyd, Sebastian A. Riquelme, Chu Wang, Alice Prince, Tania Wong Fok Lung

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